Blog
Hands-on posts on AI/ML and computational biology, here and on Medium.
Building an Agentic Resume Matcher: Python Foundations for GenAI
Learning Python foundations for GenAI development through a practical agentic application: a resume matcher.
- GenAI
- AI Agents
- Python
Building a Tool-Using LLM Agent from Scratch
Creating a UFC fight recommendation agent with tool-using and reasoning capabilities, without frameworks.
- AI Agents
- LLM
- GenAI
Building Transformer Models for Proteins From Scratch
A practical guide to building and evaluating protein language models, starting from the transformer architecture itself.
- Transformers
- Protein Language Models
- Deep Learning
A Primer to Protein Science
A concise introduction to protein science as background for understanding how AI is transforming protein research.
- Protein
- Biology
- AI
AI Takes on the UFC: Predict UFC Fight Outcomes with ChatGPT
DeepUFC is a Streamlit app that uses ChatGPT to predict UFC fight outcomes from fighter attributes and past performances.
- chatGPT
- Artificial Intelligence
- Deep Learning
- MMA
- UFC
Integrating image and tabular data for deep learning
How to build a joint deep learning model on image and tabular data with fastai and the image_tabular library, applied to the SIIM-ISIC melanoma classification challenge.
- Deep Learning
- Machine Learning
Integrative analysis of single-cell multi-omics data using deep learning (with video tutorials)
An autoencoder-based tutorial (with videos) for integrative analysis of CITE-seq single-cell gene and protein expression data.
- Deep Learning
- Machine Learning
- Autoencoder
ReFocus: Making Out-of-Focus Microscopy Images In-Focus Again
Training a U-net with feature loss to turn out-of-focus microscopy images into in-focus ones using fastai.
- Deep Learning
- Machine Learning
- Convolutional Neural Network
Predicting T Cell Receptor Specificity with Deep Learning
Predicting which epitope a T cell receptor recognizes with embeddings and convolutional neural networks on VDJdb data.
- Immunology
- Deep Learning
- TCR